Bio-informatica

AI-powered deep research tool with multi-source search (arXiv, PubMed, web), PDF text extraction, and encrypted local storage.

Astronomy and astrophysics core library

AI agent skill that researches any topic across Reddit, X, YouTube, HN, Polymarket, and the web - then synthesizes a grounded summary

Recommend new arxiv papers of your interest daily according to your Zotero libarary.

An autonomous agent that conducts deep research on any data using any LLM providers

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

Stellarium is a free GPL software which renders realistic skies in real time with OpenGL. It is available for Linux/Unix, Windows, macOS and Haiku. With Stellarium, you really see what you can see with your eyes, binoculars or a small telescope.

Convert Claude Code or Codex into the most intelligent Deep Research Agent. Collect, search, and synthesize web research into a persistent, searchable wiki that builds on itself.

For running psychology and neuroscience experiments

Create behavioral experiments in a browser using JavaScript

The open source AI research agent.

High accuracy RAG for answering questions from scientific documents with citations

This is a list of links to different freely available learning resources about computer programming, math, and science.

✨ The fundamental numerical library for JavaScript and TypeScript. ✨                   ⭐️ Star to support our work!

The open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python/R execution and traceable artifacts for reproducible research on macOS, Windows and Linux.

Making Protein folding accessible to all!

A DSL for data-driven computational pipelines

中国科研常用LaTeX模板集

A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Command-line tool that allows you to search for iOS, iPadOS, tvOS, visionOS, and macOS apps on the App Store, and download .ipa or macOS .pkg app packages.

ZMap is a fast single packet network scanner designed for Internet-wide network surveys.

An agentic company research tool powered by LangGraph and Tavily that conducts deep diligence on companies using a multi-agent framework. It leverages Google's Gemini 2.5 Flash and OpenAI's GPT-5.1 on the backend for inference.

The fastest and most memory efficient lattice Boltzmann CFD software, running on all GPUs and CPUs via OpenCL. Free for non-commercial use.

Open-source software for volunteer computing and grid computing.

Structured deep research skill for Claude Code/Open Code/Codex with human-in-the-loop control

Toward High-Accuracy Open-Source Biomolecular Structure Prediction.

Powerful and versatile visualization for Python.

An open-source internal ballistics simulator for rocket motor experimenters

📚 A curated list of papers for Software Engineers

Performance Software for Cyclists, Runners, Triathletes and Coaches

Conda recipes for the bioconda channel.

Plant phenotyping with image analysis

Scientific measurement library for instruments, experiments, and live-plotting

An open source Python package for plasma research and education

SALMONN family: A suite of advanced multi-modal LLMs

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

🧬 gget enables efficient querying of genomic reference databases

SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.

Dear ImGui apps made simple: desktop, mobile, and web from one codebase. Minimal code. Maximally readable.

All the resources I wish I knew when starting my PhD. This repository is aimed to be a living, constantly developing resource where everybody can contribute with new resources!

Common Workflow Language reference implementation

An AI co-scientist running on your desktop. Claude Science but better.

Brian is a free, open source simulator for spiking neural networks.

Facilitating Open Science

Pioneering Automated GUI Interaction with Native Agents

A library of reinforcement learning components and agents

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

Mimir — 一站式科研工作台插件：LaTeX 论文边写边编译、arXiv 文献管理、实验追踪、指标图表、GPU 服务器 SSH 任务编排，管理科研全周期。An open-source research workbench plugin for the whole research cycle.

Official git repository for Biopython (originally converted from CVS)

Fast DNS Lookup Library and CLI Tool

🦁 A research-friendly codebase for fast experimentation of multi-agent reinforcement learning in JAX

Data intensive science for everyone.

Examples for the usage of LaTeX

This repository hosts the code behind the online book, Coding for Economists.

Summer 2027 and off-season tech internships in the US. Software, data and ML, hardware, quant, and product roles, updated regularly.

Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2

A Python library for OpenAlex (openalex.org)

Python Materials Genomics (pymatgen) is a robust materials analysis code that defines classes for structures and molecules with support for many electronic structure codes. It powers the Materials Project.

🎓 AI 科研论文写作助手 - 30 个 Prompt 模板覆盖论文写作全流程。支持中英文翻译、润色、文献综述、投稿回复、基金申请等。

Software development bots for Github. Join the bot revolution! :star2::robot::star2::revolving_hearts:

🌊深度整合全球顶尖学术、金融与教育资源：学术板块汇聚 JSTOR、Taylor & Francis、剑桥大学出版社等权威平台的论文，并接入 Z-Library 影子图书馆的海量电子书；教育板块收录香港、新加坡从小学到高中以及大学学科教科书；金融板块则聚合香橼、摩根、野村等顶级机构的深度研报，只为打破信息孤岛，构建知识平权普惠知识库。

The main repository for the development of the evolution game Thrive.

MMseqs2: ultra fast and sensitive search and clustering suite

A library of free open source icons for science illustrations in biology and chemistry

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Foldseek enables fast and sensitive comparisons of large structure sets.

reading the undocumented mems accelerometer + gyroscope on apple silicon macbooks via iokit hid

Python library to facilitate genome assembly, annotation, and comparative genomics

Tutorials for the Astropy Project

Operate and manipulate physical quantities in Python

ruptures: change point detection in Python

Apptainer: Application containers for Linux

Science-Star: A Platform for Building, Extending, and Experimenting with Scientific Agents.

An R-tool for comprehensive science mapping analysis. A package for quantitative research in scientometrics and bibliometrics.

Rucio - Scientific Data Management

List of Science courses with video lectures

「Octoday Hub 星期八具身智能生态社区」聚合论文、项目、课程、工具、数据集、招聘等资源，连接全球开发者、研究者与产业伙伴。

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

List of awesome RSS channels related to startup, science and technology.

Minimal metadata schemas for science software and code, in JSON-LD

:seedling: a curated list of tools to help you with your research/life; I built a front end around this repo, please use the link below [This repo is deprecated. Instead, I maintain all the contents using the following website]

Curated (meta)list of resources for Biology.

Generate custom Docker and Singularity images, and minimize existing containers

Official code repository for GATK versions 4 and up

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

ObsPy: A Python Toolbox for seismology/seismological observatories.

the simple alchemistry library

A computer algebra system written in pure Python

last30days-cn 是一个 AI Agent 技能（Skill），能够自动搜索中国互联网 8 大主流平台最近 30 天的内容，综合分析后生成有据可查的研究报告。

[NeurIPS 2025] 🌐 WebThinker: Empowering Large Reasoning Models with Deep Research Capability

The code powering code.org and studio.code.org

Science-based games - a collaborative list

HackGPT Enterprise is a production-ready, cloud-native AI-powered penetration testing platform designed for enterprise security teams. It combines advanced AI, machine learning, microservices architecture, and comprehensive security frameworks to deliver professional-grade cybersecurity assessments.

Taming Stable Diffusion for Lip Sync!

tools for working with genome variation graphs

🔬 Research Framework for Single and Multi-Players 🎰 Multi-Arms Bandits (MAB) Algorithms, implementing all the state-of-the-art algorithms for single-player (UCB, KL-UCB, Thompson...) and multi-player (MusicalChair, MEGA, rhoRand, MCTop/RandTopM etc).. Available on PyPI: https://pypi.org/project/SMPyBandits/ and documentation on

Resources on the topic of digital morphogenesis (creating form with code). Includes links to major articles, code repos, creative projects, books, software, and more.

The first open-source agentic AI physicist, by Physical Superintelligence PBC (PSI).

Java utilities for Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

Claude Code skills for academic papers: deep analysis, comics, summaries | 论文工艺：深度解读、漫画生成、速览总结

Karta - source code assisted fast binary matching plugin for IDA

A curated list of Smart Contract Security materials and resources For Researchers

Findpapers: A tool for helping researchers who are looking for related works

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Research archive of Claude Code source and runtime artifacts reconstructed from published npm source maps.

This R statistical nmath module re-created in typescript/javascript and handwritten webassembly.

Python-based modeling and simulation framework for Edge Computing resource management policies

Collection of PoC and offensive techniques used by the BlackArrow Red Team

A curated, public list of resources for biomechanics and human motion analysis: datasets, processing tools, software for simulation, educational videos, lectures, etc.

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

`GitHub` `Markdown` `OSINT` `Research` - The Observatory for Digital Infrastructure & Network Transparency https://odint.io/

A simulation framework for Robotic Mobile Fulfillment Systems

Python to the people

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

In-browser falling-sand simulation game with over 500 elements and thousands of reactions.

This repository contains a list of important and useful github repos which a developer, coder, a student should never miss to look at.

Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

Here we collect and discuss the best DeFI & Blockchain researches and tools. Feel free to DM me on Twitter or open pool request.

SSHamble: Unexpected Exposures in SSH

A list of computer-science readings I recommend

This repo contains the code for 1D tokenizer and generator

This component implements transition animation to crumble view-controller into tiny pieces.

🔬 A repository of resources related to citizen, community-based and/or non-institutional science

machine learning for genomic variants

Theseus is a modern OS written from scratch in Rust that explores 𝐢𝐧𝐭𝐫𝐚𝐥𝐢𝐧𝐠𝐮𝐚𝐥 𝐝𝐞𝐬𝐢𝐠𝐧: closing the semantic gap between compiler and hardware by maximally leveraging the power of language safety and affine types. Theseus aims to shift OS responsibilities like resource management into the compiler.

Renders papers from arXiv as responsive web pages so you don't have to squint at a PDF.

Toolkit for processing sequences in FASTA/Q formats

Convert any PDF into a podcast episode!

A mindmap summarising Deep Learning concepts.

Models of COVID-19 outbreak trajectories and hospital demand

Convert LaTeX documents into beautiful responsive web pages using LaTeXML.

PYBOSSA is the ultimate crowdsourcing framework (aka microtasking) to analyze or enrich data that can't be processed by machines alone.

Unix, R and python tools for genomics and data science

Turn Python scripts into handouts with Markdown and figures

The futuristic, fabulous and free desktop app for working with scientific literature :microscope: :book:

Signal-level algorithms for MinION data

A pretty printing calculator language with support for units. Makes calculations easier and more presentable with real time LaTeX output, along with support for units, variables, and mathematical functions.

:microscope: Assemble large genomes using short reads

Research programs for Undergraduate students

论文写作与资料分享

Collection of quality safety articles. Awesome articles.

A comprehensive and long list of things a modern scientist is supposed to know

A repository for setting up a RNAseq workflow

A list of resources on how/why to do a PhD

An index of algorithms for offline reinforcement learning (offline-rl)

Periodum: An Interactive, Open-Source Periodic Table!

This repository contains all the resources and solution to quizzes given and asked in IBM Data Science Professional Certification.